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Protein-protein interactions improve multiple transcription factor binding site prediction

Laurila, Kirsti; Pukkila, Heidi; Yli-Harja, Olli; Lähdesmäki, Harri
-2009Publicationer information ikon

Human transcription factor protein interaction networks

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DOI
10.1038/s41467-022-28341-5
Göös, Helka; Kinnunen, Matias; Salokas, Kari; Tan, Zenglai; Liu, Xiaonan; Yadav, Leena; Zhang, Qin; ...
Nature communications2022Publicationer information ikon

Disentangling transcription factor binding site complexity

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DOI
10.1093/nar/gky683
Eggeling, Ralf
Nucleic Acids Research2018Publicationer information ikon

Modeling binding specificities of transcription factor pairs with random forests

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DOI
10.1186/s12859-022-04734-7
Antikainen, Anni A.; Heinonen, Markus; Lähdesmäki, Harri
Bmc bioinformatics2022Publicationer information ikon

Associative Clustering to Find Dependencies Between Expression Profiles and Transcription Factor Binding

Nikkilä, Janne; Roos, C.; Sinkkonen, Janne; Kaski, S.
-2003Publicationer information ikon

Integration of Transcription Factor Binding and Gene Expression by Associative Custering

Referentgranskad
Nikkilä, J.; Roos, C.; Kaski, S.
-2005Publicationer information ikon

Role of Circadian Transcription Factor Rev-Erb in Metabolism and Tissue Fibrosis

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DOI
10.3390/ijms232112954
Raza, Ghulam Shere; Sodum, Nalini; Kaya, Yagmur; Herzig, Karl-Heinz
International journal of molecular sciences2022Publicationer information ikon

Nuclear Factor I Family Members are Key Transcription Factors Regulating Gene Expression

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10.1016/j.mcpro.2024.100890
Malaymar Pinar, Dicle; Göös, Helka; Tan, Zenglai; Kumpula, Esa-Pekka; Chowdhury, Iftekhar; Wang, Zix...
Molecular and cellular proteomics2025Publicationer information ikon

Transcription factor 7-like 2 (TCF7L2)

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DOI
10.1007/978-3-319-01574-3_14
Grant, Struan F. A.; Groop, L.
Springer2016Publicationer information ikon

A long hypoxia-inducible factor 3 isoform 2 is a transcription activator that regulates erythropoietin

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DOI
10.1007/s00018-019-03387-9
Tolonen, Jussi-Pekka; Heikkilä, Minna; Malinen, Marjo; Lee, Hang-Mao; Palvimo, Jorma J.; Wei, Gong-H...
Cellular and molecular life sciences2019

Protein-protein interactions improve multiple transcription factor binding site prediction

2009

Human transcription factor protein interaction networks

Referentgranskad
Öppen tillgång
DOI
10.1038/s41467-022-28341-5
2022

Disentangling transcription factor binding site complexity

Referentgranskad
Öppen tillgång
DOI
10.1093/nar/gky683
2018

Modeling binding specificities of transcription factor pairs with random forests

Referentgranskad
Öppen tillgång
DOI
10.1186/s12859-022-04734-7
2022

Associative Clustering to Find Dependencies Between Expression Profiles and Transcription Factor Binding

2003

Integration of Transcription Factor Binding and Gene Expression by Associative Custering

Referentgranskad
2005

Role of Circadian Transcription Factor Rev-Erb in Metabolism and Tissue Fibrosis

Referentgranskad
Öppen tillgång
DOI
10.3390/ijms232112954
2022

Nuclear Factor I Family Members are Key Transcription Factors Regulating Gene Expression

Referentgranskad
Öppen tillgång
DOI
10.1016/j.mcpro.2024.100890
2025

Transcription factor 7-like 2 (TCF7L2)

Referentgranskad
DOI
10.1007/978-3-319-01574-3_14
2016

A long hypoxia-inducible factor 3 isoform 2 is a transcription activator that regulates erythropoietin

Referentgranskad
Öppen tillgång
DOI
10.1007/s00018-019-03387-9
2019